Nexo Tech Labs

Nexo Health & Pharma

A protein in slow motion

We study one of the many proteins in our body. In Alzheimer's disease it is altered inside neurons and stops doing its job properly.

ForPharma and biotech R&D and research groups

molecular dynamics

The challenge

Why it matters

What this protein does is fairly well known, but much less so how it moves. That detail, at the scale of atoms and millionths of a second, is very hard to see in the lab.

How we solve it

Data, model, solution

  1. 01

    Data

    The protein's structure and the physical parameters of each atom and its surroundings.

  2. 02

    Model

    Molecular dynamics simulation on supercomputers: millions of time steps.

  3. 03

    Solution

    Trajectories showing how it folds and moves: what a microscope cannot see.

What's included

In detail

  • Molecular dynamics
  • Supercomputing (HPC)
  • Structural biology
  • Trajectory analysis
  • Simulation of the protein in its environment, atom by atom
  • Analysis of conformations and flexible regions
  • Intensive supercomputing
  • A basis to guide the design of future drugs

It is not a treatment: it helps to understand the disease and guide future therapies.

FAQ

Questions we often get

What is molecular dynamics?

A simulation technique that calculates, step by step, the forces between the atoms of a molecule to reproduce how it moves over time.

Why is supercomputing needed?

A protein with its surroundings has hundreds of thousands of atoms and millions of very short steps must be simulated: only feasible with high-performance computing.

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